Taking the box culvert of Minsi South Road in Suzhou high-speed rail town as an example, this paper analyzes the surface deformation and the displacement of the metro by establishing a three-dimensional finite element model. The results show that the excavation and backfilling of each section in the segmented construction has little influence on the deformation disturbance of the subway structure, which ensures the safety of the underlying metro.The result can provide reference for similar engineering design and construction.